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Project Scope

Landscape of what CICD is used today across the pharmaverse, and key pre-named reference packages outside the pharmaverse used in clinical reporting (e.g. ggplot2, survminer).
Summarise integration deployment and release pain points within these R packages.
Connect with the R Validation Hub and vendor tooling (e.g. Atorus openvalidate) to understand what key devops tooling could be applied to packages to accelerate validation.
Deliverable 1: Summarise the state of DevOps in the pharmaverse today, with proposals on key tools used already, and where there are gaps.
Deliverable 2: Develop the existing CICD library used in some pharmaverse R packages (referenced earlier in this proposal) to:
- deliver a recommended suite of CICD tools for R and python packages that improve developer efficiency, and ensure code is well tested and consistent when merged to branch
- provide off-the-shelf configurations to use tools such as docker images managed locally or via Github codespaces to simplify environment management.

Project Leads	Email
Dinakar Kulkarni, Genentech	kulkard2@gene.com
James Black, Roche	James.black.jb2@roche.com
Ben Straub, GSK	ben.x.straub@gsk.com
Alex Pearce, PHUSE Project Assistant	alexandra@phuse.global

Status

colour	Blue
title	CURRENT STATUS

Q3 2024

Objectives & Deliverables	Timelines
Preparation of deliverable for PHUSE US Connect 2024	Q3 2023
V1.0 of suite/library of CICD tools released	Q4 2023
Support adoption across pharmaverse and biostatistics packages where maintainers are willing to collaborate	Q1 2024
Close V1.0 with hackathon in the lead-up to the PHUSE CSS 2024	Q2/Q3 2024

Resources
PharmaDevOps GitHub

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